aPelCul1.1.fa.gz  -> contains the assembly super-scaffolds and scaffolds in fasta format
aPelCul1.1.Repeats.gff3.gz --> Repeat annotation in gff3 format
PECUL23A.aPelCul1.1.gff3.gz -> gff3 file with the protein coding annotation
PECUL23A.ss.pep.fa.gz -> fasta file with the aminoacid sequence of each annotated protein
PECUL23A.ss.cds.fa.gz -> fasta file with the nucleotid sequence corresponding to the coding part of each annotated protein
PECUL23A.ss.transcripts.fa.gz -> fasta file with the nucleotide sequence of each coding transcript.
PECUL23A.ss.longestpeptide.fa.gz -> fasta file with the aminoacid sequence of the longest protein isoform of each protein coding gene.
PECUL23A.ss.stats.txt.gz -> statistics of the protein-coding gene annotation
PECUL23ncA.aPelCul1.1.gff3.gz -> gff3 file with the noncoding RNA annotation
PECUL23ncA.transcripts.fa.gz -> fasta file with the nucleotide sequence of the noncoding transcripts.
PECUL23A.protein_definition.txt.gz --> file with the protein definitions assigned by Blast2GO. 
PECUL23A.GO_prot.txt.gz --> file with the assigned GO terms to each protein
PECUL23A.EC_prot.txt.gz --> file with the EC terms of each protein
PECUL23A.go4topGO.genes.txt.gz --> file with the GO terms per gene to use as input for topGO