Fri Sep 23 12:17:28 CEST 2022

Assembly obtained with NextDenovo, polished with Hypo using 2 iterations (using ONT and illumina reads) and purged using purge_dups (to keep just one haplotype per locus/contig).

Despite of the name, the output file (xbRudDecu1.cnag2.scaffolds.fa.gz) is actually containing contigs. There are no gaps in this assembly.