fXyrNov1_cnag1.scaffolds.fa.gz --> multifasta file with the assembly scaffolds
Xnov1A.FA.gff3.gz --> gff3 file with the protein coding annotation
Xnov1A.cds.fa.gz --> multifasta file with the nucleotide sequence of the annotated proteins
Xnov1A.pep.fa.gz --> multifasta file with the aminoacid sequence of the annotated proteins
Xnov1A.transcripts.fa.gz --> multifasta sequence file with the nucleotide sequence of the annotated protein-coding transcripts
Xnov1A.longestpeptide.fa.gz --> multifasta sequence with the aminoacid sequence of the longest isoform of each protein-coding gene
Xnov1A.stats.txt --> statistics of the protein-coding annotation
protein_definition.txt --> protein definitions that have been assigned to the annotated proteins by Blast2go
GO_prot.txt --> GO terms that have been assigned to the annotated proteins by Blast2go
Repeats.4jb.gff3.gz --> gff3 file with the Repeat annotation
Xnov1ncA.gff3.gz --> gff3 file with the non-coding annotation
Xnov1ncA.transcripts.fa.gz --> multifasta sequence file with the nucleotide sequence of the annotated non-coding transcripts
Genome_annotation_report.pdf --> report with methods and reults of the genome assembly and annotation