pdulcis26.contigs.fa.gz --> contains the assembled contings in fasta format
pdulcis26.scaffolds.fa.gz  -> contains the assembly scaffolds in fasta format
pdulcis26.scaffolds.agp --> Agp file with the contig composition of the scaffolds
pdulcis26.chromosomes.fasta.gz --> fasta file with the chromosomes
pdulcis26.chromosomes.agp -> Agp file with the scaffold composition of the reconstructed chromosomes. 
Prudul26B.gff3.gz -> gff3 file with the new version of the protein coding annotation in scaffold coordinates
Prudul26B.pep.fa.gz -> fasta file with the aminoacid sequence of new version of the each annotated protein
Prudul26B.cds.fa.gz -> fasta file with the nucleotid sequence corresponding to the coding part of each annotated protein in the new version.
Prudul26B.transcripts.fa.gz -> fasta file with the nucleotide sequence of each coding transcript in the new version.
Prudul26B.longestpeptide.fa.gz -> fasta file with the aminoacid sequence of the longest protein isoform of each protein coding gene.
Prudul26ncB.gff3.gz -> gff3 file with the new version of the noncoding RNA annotation in scaffold coordinates
Prudul26ncB.transcripts.fa.gz -> fasta file with the nucleotide sequence of the noncoding transcripts in the new version of the annotation.
Prudul26A.gff3.gz -> gff3 file with the protein coding annotation in scaffold coordinates
Prudul26A.chromosomes.gff3.gz --> gff3 file with the protein coding annotation in chromosome coordinates
Prudul26A.pep.fa.gz -> fasta file with the aminoacid sequence of each annotated protein
Prudul26A.cds.fa.gz -> fasta file with the nucleotid sequence corresponding to the coding part of each annotated protein
Prudul26A.transcripts.fa.gz -> fasta file with the nucleotide sequence of each coding transcript.
Prudul26A.longestpeptide.fa.gz -> fasta file with the aminoacid sequence of the longest protein isoform of each protein coding gene.
Prudul26ncA.gff3.gz -> gff3 file with the noncoding RNA annotation in scaffold coordinates
Prudul26ncA.chromosomes.gff3.gz --> gff3 file with the noncoding RNA annotation in chromosome coordinates
Prudul26ncA.transcripts.fa.gz -> fasta file with the nucleotide sequence of the noncoding transcripts.