pcla8.scaffolds.fa.gz  -> contains the assembly scaffolds in fasta format
purged_scaffolds.ids.gz --> List of pcla6 scaffolds that have been deleted after running purgeHaplotigs.
Pacla8A.gff3.gz -> gff3 file with the protein coding annotation 
Pacla8A.pep.fa.gz -> fasta file with the aminoacid sequence of each annotated protein
Pacla8A.cds.fa.gz -> fasta file with the nucleotide sequence corresponding to the coding part of each annotated protein
Pacla8A.transcripts.fa.gz -> fasta file with the nucleotide sequence of each coding transcript.
Pacla8A.longestpeptide.fa.gz -> fasta file with the aminoacid sequence of the longest protein isoform of each protein coding gene.
Pacla8ncA.gff3.gz -> gff3 file with the noncoding RNA annotation
Pacla8ncA.transcripts.fa.gz -> fasta file with the nucleotide sequence of the noncoding transcripts.
pcla8.Repeats.gff3.gz --> gff3 file with the Repeat annotation
Pacla8A.protein_definition.txt.gz --> protein definitions that have been assigned to the annotated proteins by Blast2go
Seq_Microsat_Pcla8.gff3.gz --> Gff3 file with the annotation of some microsatellites