Publications

Kuderna, Lukas F K et al. “Selective Single Molecule Sequencing And Assembly Of A Human Y Chromosome Of African Origin.”. Nature Communications 10.1 (2019): 4+.
Puerma, Eva et al. “The High-Quality Genome Sequence Of The Oceanic Island Endemic Species Drosophila Guanche Reveals Signals Of Adaptive Evolution In Genes Related To Flight And Genome Stability.”. Genome Biology and Evolution 10.8 (2018): 1956-1969, .
Alioto, Tyler et al. “Using Geneid To Identify Genes.”. Current Protocols in Bioinformatics (2018): n. pag.
Chaves-Pozo, Elena et al. “European Sea Bass Brain Dlb-1 Cell Line Is Susceptible To Nodavirus: A Transcriptomic Study.”. Fish & Shellfish Immunology 86 (2018): 14-24, .
Hernandez, Inmaculada et al. “Epigenetic Regulation Of Gene Expression In Chinese Hamster Ovary Cells In Response To The Changing Environment Of A Batch Culture.”. Biotechnology and Bioengineering (2018): n. pag.
Liedtke, Christoph et al. “De Novo Assembly And Annotation Of The Larval Transcriptome Of Two Spadefoot Toads Widely Divergent In Developmental Rate”. BioRxiv (2018): n. pag.
Chaves-Pozo, Elena et al. “Innate Cell-Mediated Cytotoxic Activity Of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional And Rna-Seq Study.”. Scientific reports 7.1 (2017): 15396+.
Kuderna, Lukas F K et al. “A 3-Way Hybrid Approach To Generate A New High-Quality Chimpanzee Reference Genome (Pan_Tro_3.0).”. GigaScience 6.11 (2017): 1-6, .
Kleinman-Ruiz, Daniel et al. “Novel Efficient Genome-Wide Snp Panels For The Conservation Of The Highly Endangered Iberian Lynx.”. BMC Genomics 18.1 (2017): 556+.
Gabaldón, Toni, and Tyler S. Alioto. “Whole-Genome Sequencing Recommendations”. Field Guidelines For Genetic Experimental Designs In High-Throughput Sequencing. Cham: Springer International Publishing, 2016. 13-41, .
Figueras, Antonio et al. “Whole Genome Sequencing Of Turbot (Scophthalmus Maximus; Pleuronectiformes): A Fish Adapted To Demersal Life.”. DNA Research 23.3 (2016): 181-192, .
Cruz, Fernando et al. “Genome Sequence Of The Olive Tree, Olea Europaea.”. GigaScience 5 (2016): 29+.
Abascal, Federico et al. “Extreme Genomic Erosion After Recurrent Demographic Bottlenecks In The Highly Endangered Iberian Lynx.”. Genome Biology 17.1 (2016): 251+.
Vlasova, Anna et al. “Genome And Transcriptome Analysis Of The Mesoamerican Common Bean And The Role Of Gene Duplications In Establishing Tissue And Temporal Specialization Of Genes.”. Genome Biology 17 (2016): 32+.
Alioto, Tyler. “The Genome Of The Iberian Lynx”. Plant And Animal Genome Xxiii Conference. Plant and Animal Genome, 2015. Print.
Alioto, Tyler S et al. “A Comprehensive Assessment Of Somatic Mutation Detection In Cancer Using Whole-Genome Sequencing.”. Nature Communications 6 (2015): 10001+.
Piqué, Núria et al. “Genome Sequence Of Plesiomonas Shigelloides Strain 302-73 (Serotype O1).”. Genome announcements 1.4 (2013): n. pag.
Alioto, Tyler et al. “Aspic-Geneid: A Lightweight Pipeline For Gene Prediction And Alternative Isoforms Detection.”. BioMed research international 2013 (2013): 502827+.
Consortium, ENCODE Project. “An Integrated Encyclopedia Of Dna Elements In The Human Genome.”. Nature 489.7414 (2012): 57-74, .
Garcia-Mas, Jordi et al. “The Genome Of Melon (Cucumis Melo L.).”. Proceedings of the National Academy of Sciences of the United States of America 109.29 (2012): 11872-11877, .
Alioto, Tyler. “Gene Prediction.”. Methods in Molecular Biology 855 (2012): 175-201, .
Djebali, Sarah et al. “Landscape Of Transcription In Human Cells.”. Nature 489.7414 (2012): 101-108, .
Mudge, Jonathan M et al. “The Origins, Evolution, And Functional Potential Of Alternative Splicing In Vertebrates.”. Molecular Biology and Evolution 28.10 (2011): 2949-2959, .
Consortium, ENCODE Project. “A User's Guide To The Encyclopedia Of Dna Elements (Encode).”. PLoS Biology 9.4 (2011): n. pag.